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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Smarcc1
wikigenes
PDBj
CellType: Tumor
ATCC
MeSH
RIKEN BRC
SRX8673295
GSM4656152: 4-Baf155; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Smarcc1
Cell type
Cell type Class
Others
Cell type
Tumor
NA
NA
Attributes by original data submitter
Sample
source_name
mouse tumor
genotype
SS18-SSX+
chip antibody
Baf155
strain
C57BL/6
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Nuclei was isolated from snap frozen samples. Lysates were clarified from sonicated nuclei and BAF-DNA complexes were isolated with antibody. Library was prepared using NEBnext ChIP-seq libraray prep reagent set
Sequencing Platform
instrument_model
Illumina NovaSeq 6000
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
28470704
Reads aligned (%)
97.8
Duplicates removed (%)
26.1
Number of peaks
263 (qval < 1E-05)
mm9
Number of total reads
28470704
Reads aligned (%)
97.7
Duplicates removed (%)
26.9
Number of peaks
253 (qval < 1E-05)
Base call quality data from
DBCLS SRA